If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ), 'gf_id' => 'HOM05D000599', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000599' ), 'data_identifier' => 'HOM05D000599', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000599', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '940', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39150' => 'bna', 'A05p34360' => 'bna', 'A08p07200' => 'bna', 'A09p41050' => 'bna', 'Aa31LG7G7630' => 'aar', 'Aa31LG8G2300' => 'aar', 'Aa31LG9G5490' => 'aar', 'Aa31LG9G5500' => 'aar', 'Aa31LG9G5510' => 'aar', 'Aa31LG9G5520' => 'aar', 'Aa31LG9G5530' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1632' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5824' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5825' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5832' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4409' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.704' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.514' => 'aag', 'Actinidia09458' => 'ach', 'Actinidia12278' => 'ach', 'Actinidia12546' => 'ach', 'Actinidia23379' => 'ach', 'Actinidia23768' => 'ach', 'Actinidia30029' => 'ach', 'Actinidia31434' => 'ach', 'Ah.02g129940' => 'amhyb', 'Ah.04g164460' => 'amhyb', 'Ah.08g214780' => 'amhyb', 'Ah.08g214790' => 'amhyb', 'Ah.11g050580' => 'amhyb', 'Ah.15g094030' => 'amhyb', 'AL1G37490' => 'aly', 'AL3G27440' => 'aly', 'AL7G51750' => 'aly', 'AL9U11390' => 'aly', 'Aqoxy1G02691' => 'aox', 'Aqoxy1G02692' => 'aox', 'Aqoxy3G01026' => 'aox', 'Aqoxy4G00576' => 'aox', 'Aqoxy5G03815' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0UK4JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.10FGX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1RGP8K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5KWE5R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.63ULTQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7D2KDI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92NCAE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9QY9FC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AD0SU5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E0BZDJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7HBQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NW9AW3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P7SG64' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD8C8E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PZ3VRY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT2X3H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TCGF9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.THHQ0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UUM6WI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKPY92' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y3F33F' => 'arhy', 'AT1G23740' => 'ath', 'AT3G15090' => 'ath', 'AT4G13010' => 'ath', 'ATR0561G094' => 'atr', 'ATR0561G182' => 'atr', 'ATR0561G183' => 'atr', 'ATR0561G276' => 'atr', 'ATR0602G106' => 'atr', 'ATR0730G112' => 'atr', 'ATR0757G003' => 'atr', 'Atru.chr11.2032' => 'acertr', 'Atru.chr11.2436' => 'acertr', 'Atru.chr2.2379' => 'acertr', 'Atru.chr5.333' => 'acertr', 'AUR62001152' => 'cqu', 'AUR62001153' => 'cqu', 'AUR62005383' => 'cqu', 'AUR62010879' => 'cqu', 'AUR62014045' => 'cqu', 'AUR62016523' => 'cqu', 'AUR62016524' => 'cqu', 'AUR62019503' => 'cqu', 'AUR62021392' => 'cqu', 'AUR62036135' => 'cqu', 'BcaB04g17727' => 'bca', 'BcaB06g29534' => 'bca', 'BcaC01g03893' => 'bca', 'BcaC01g03898' => 'bca', 'BcaC05g26278' => 'bca', 'BcaC07g37408' => 'bca', 'BolC3t17014H' => 'bol', 'BolC5t30994H' => 'bol', 'BolC5t33898H' => 'bol', 'BolC8t47731H' => 'bol', 'BraA03t13064Z' => 'bra', 'BraA05t22256Z' => 'bra', 'BraA08t32732Z' => 'bra', 'BraA09t39598Z' => 'bra', 'C03p47500' => 'bna', 'C05p22950' => 'bna', 'C05p52130' => 'bna', 'C08p08850' => 'bna', 'CAN.G1115.3' => 'can', 'CAN.G1173.11' => 'can', 'CAN.G137.54' => 'can', 'CAN.G1572.1' => 'can', 'CAN.G199.57' => 'can', 'CAN.G329.7' => 'can', 'CAN.G507.5' => 'can', 'CAN.G573.2' => 'can', 'CAN.G984.1' => 'can', 'CANSAT01G0437' => 'cansat', 'CANSAT01G1593' => 'cansat', 'CANSAT01G1811' => 'cansat', 'CANSAT01G2016' => 'cansat', 'CANSAT01G2196' => 'cansat', 'CANSAT01G2892' => 'cansat', 'CANSAT01G2944' => 'cansat', 'CANSAT21G0501' => 'cansat', 'CANSAT35G1865' => 'cansat', 'CANSAT54G2886' => 'cansat', 'CANSAT64G1029' => 'cansat', 'CARHR024130' => 'chi', 'CARHR024140' => 'chi', 'CARHR024150' => 'chi', 'CARHR024160' => 'chi', 'CARHR090050' => 'chi', 'CARHR218300' => 'chi', 'Carub.0001s2325' => 'cru', 'Carub.0003s1473' => 'cru', 'Carub.0007s2976' => 'cru', 'Ca_02397_v3' => 'car', 'Ca_04028_v3' => 'car', 'Ca_04196_v3' => 'car', 'Ca_04658_v3' => 'car', 'Ca_05322_v3' => 'car', 'Ca_06858_v3' => 'car', 'Ca_07506_v3' => 'car', 'Ca_19682_v3' => 'car', 'Ca_23834_v3' => 'car', 'Ca_27845_v3' => 'car', 'CBR_g49987' => 'cbr', 'Cc00_g12490' => 'ccan', 'Cc01_g16480' => 'ccan', 'Cc02_g36460' => 'ccan', 'Cc03_g09960' => 'ccan', 'Cc05_g11570' => 'ccan', 'Cc07_g02230' => 'ccan', 'Cc07_g20020' => 'ccan', 'Cc07_g20100' => 'ccan', 'Cc10_g11920' => 'ccan', 'Cc11_g14730' => 'ccan', 'CDE02G1309' => 'cde', 'CDE03G0368' => 'cde', 'CDE05G3689' => 'cde', 'CDE09G0639' => 'cde', 'CDE11G0812' => 'cde', 'Cfa007425' => 'cfa', 'Cfa007426' => 'cfa', 'Cfa007427' => 'cfa', 'Cfa009147' => 'cfa', 'Cfa010405' => 'cfa', 'Cfa010406' => 'cfa', 'Cfa010407' => 'cfa', 'Cfa010408' => 'cfa', 'Cfa010410' => 'cfa', 'Cfa010411' => 'cfa', 'Cfa020625' => 'cfa', 'Cfa022734' => 'cfa', 'Cfa023733' => 'cfa', 'Cfa024040' => 'cfa', 'Cfa024041' => 'cfa', 'Cfa025112' => 'cfa', 'Cfa025472' => 'cfa', 'Cfa025572' => 'cfa', 'Ciclev10008721m.g' => 'ccl', 'Ciclev10017463m.g' => 'ccl', 'Ciclev10018374m.g' => 'ccl', 'Ciclev10021072m.g' => 'ccl', 'Ciclev10021118m.g' => 'ccl', 'Ciclev10023794m.g' => 'ccl', 'Ciclev10024569m.g' => 'ccl', 'Ciclev10032327m.g' => 'ccl', 'CiPaw.01G260100' => 'cil', 'CiPaw.03G038100' => 'cil', 'CiPaw.03G038200' => 'cil', 'CiPaw.06G071900' => 'cil', 'CiPaw.11G166300' => 'cil', 'CiPaw.12G116700' => 'cil', 'CiPaw.13G049900' => 'cil', 'CiPaw.13G050000' => 'cil', 'CiPaw.13G050100' => 'cil', 'CiPaw.14G039700' => 'cil', 'CiPaw.14G039800' => 'cil', 'CiPaw.14G039900' => 'cil', 'ClCG05G009200' => 'cla', 'ClCG05G025320' => 'cla', 'ClCG09G008690' => 'cla', 'ClCG09G018900' => 'cla', 'ClCG10G008480' => 'cla', 'COL.COLO4_16115' => 'col', 'COL.COLO4_16116' => 'col', 'COL.COLO4_16117' => 'col', 'COL.COLO4_24170' => 'col', 'COL.COLO4_28952' => 'col', 'COL.COLO4_28957' => 'col', 'COL.COLO4_28958' => 'col', 'COL.COLO4_28965' => 'col', 'COL.COLO4_34031' => 'col', 'COL.COLO4_36876' => 'col', 'Cpa.g.c46715' => 'cpa', 'Cpa.g.sc69.44' => 'cpa', 'Cpa.g.sc8.117' => 'cpa', 'Cpa.g.sc8.118' => 'cpa', 'Cpa.g.sc80.13' => 'cpa', 'Cre06.g297400' => 'cre', 'CsaV3_3G019590' => 'csa', 'CsaV3_5G031580' => 'csa', 'CsaV3_5G037230' => 'csa', 'CsaV3_7G026280' => 'csa', 'CsaV3_7G026290' => 'csa', 'CSS0001116' => 'camsi', 'CSS0001358' => 'camsi', 'CSS0006125' => 'camsi', 'CSS0006280' => 'camsi', 'CSS0008026' => 'camsi', 'CSS0008464' => 'camsi', 'CSS0013969' => 'camsi', 'CSS0017536' => 'camsi', 'CSS0019298' => 'camsi', 'CSS0025668' => 'camsi', 'CSS0031112' => 'camsi', 'CSS0032174' => 'camsi', 'CSS0038602' => 'camsi', 'CSS0039217' => 'camsi', 'CSS0039326' => 'camsi', 'CSS0039722' => 'camsi', 'CSS0043173' => 'camsi', 'CSS0043714' => 'camsi', 'CSS0045280' => 'camsi', 'CSS0046061' => 'camsi', 'CSS0047101' => 'camsi', 'DCAR_000510' => 'dca', 'DCAR_000511' => 'dca', 'DCAR_000512' => 'dca', 'DCAR_004744' => 'dca', 'DCAR_004745' => 'dca', 'DCAR_004746' => 'dca', 'DCAR_004753' => 'dca', 'DCAR_005698' => 'dca', 'DCAR_008595' => 'dca', 'DCAR_012681' => 'dca', 'DCAR_012682' => 'dca', 'DCAR_015042' => 'dca', 'DCAR_018633' => 'dca', 'DCAR_019576' => 'dca', 'DCAR_019580' => 'dca', 'DCAR_021003' => 'dca', 'DCAR_021005' => 'dca', 'DCAR_026540' => 'dca', 'DCAR_031704' => 'dca', 'Dinv15291' => 'din', 'Dinv20217' => 'din', 'Dinv28837' => 'din', 'Dinv35062' => 'din', 'Dinv43730' => 'din', 'Duzib133G0575' => 'dzi', 'Duzib133G0667' => 'dzi', 'Duzib138G0930' => 'dzi', 'Duzib138G1332' => 'dzi', 'Duzib138G1391' => 'dzi', 'Duzib150G0094' => 'dzi', 'Duzib170G0842' => 'dzi', 'Duzib177G0850' => 'dzi', 'Duzib187G1775' => 'dzi', 'Duzib211G0427' => 'dzi', 'Duzib213G1012' => 'dzi', 'Duzib251G0866' => 'dzi', 'Duzib264G0407' => 'dzi', 'Duzib264G0781' => 'dzi', 'Duzib268G0658' => 'dzi', 'ECA233G1675' => 'eca', 'ECA236G5079' => 'eca', 'ECA246G4133' => 'eca', 'ECA248G2943' => 'eca', 'EL10Ac4g08277' => 'bvu', 'EL10Ac6g13676' => 'bvu', 'EL10Ac7g17937' => 'bvu', 'EL10Ac7g17938' => 'bvu', 'EL10Ac7g17939' => 'bvu', 'Eucgr.E01364' => 'egr', 'Eucgr.F01180' => 'egr', 'Eucgr.H02605' => 'egr', 'Eucgr.I01799' => 'egr', 'Eucgr.I01800' => 'egr', 'Eucgr.I01801' => 'egr', 'Eucgr.I01803' => 'egr', 'Eucgr.I01805' => 'egr', 'Eucgr.I01807' => 'egr', 'Eucgr.I01808' => 'egr', 'Eucgr.I01810' => 'egr', 'Eucgr.K02118' => 'egr', 'Eucgr.K02119' => 'egr', 'Eucgr.K02120' => 'egr', 'Eucgr.K02121' => 'egr', 'Eucgr.K02122' => 'egr', 'Eucgr.K02123' => 'egr', 'Eucgr.K02125' => 'egr', 'FAN02G1845' => 'fan', 'FAN05G3535' => 'fan', 'FAN07G0608' => 'fan', 'FAN09G1721' => 'fan', 'FAN10G3122' => 'fan', 'FAN11G3855' => 'fan', 'FAN12G4022' => 'fan', 'FAN14G2683' => 'fan', 'FAN15G0436' => 'fan', 'FAN15G0866' => 'fan', 'FAN15G2365' => 'fan', 'FAN15G2758' => 'fan', 'FAN15G3237' => 'fan', 'FAN16G1937' => 'fan', 'FAN17G0773' => 'fan', 'FAN21G2449' => 'fan', 'FAN22G0370' => 'fan', 'FAN23G0427' => 'fan', 'FAN23G0615' => 'fan', 'FAN23G3016' => 'fan', 'FAN24G0546' => 'fan', 'FAN24G3172' => 'fan', 'FAN24G3561' => 'fan', 'FAN24G3567' => 'fan', 'FAN25G3373' => 'fan', 'FAN27G0318' => 'fan', 'FAN27G1390' => 'fan', 'FAN27G1496' => 'fan', 'FAN27G3520' => 'fan', 'FvH4_2g18240' => 'fve', 'FvH4_2g18260' => 'fve', 'FvH4_2g18280' => 'fve', 'FvH4_2g18300' => 'fve', 'FvH4_2g18310' => 'fve', 'FvH4_2g18320' => 'fve', 'FvH4_2g18330' => 'fve', 'FvH4_2g18340' => 'fve', 'FvH4_2g18350' => 'fve', 'FvH4_3g19130' => 'fve', 'FvH4_4g34500' => 'fve', 'FvH4_6g50700' => 'fve', 'FvH4_6g50701' => 'fve', 'Glyma.08G240202' => 'gma', 'Glyma.08G286800' => 'gma', 'Glyma.08G347300' => 'gma', 'Glyma.12G002100' => 'gma', 'Glyma.12G227400' => 'gma', 'Glyma.13G272900' => 'gma', 'Glyma.16G073600' => 'gma', 'Glyma.18G138300' => 'gma', 'Glyma.18G158700' => 'gma', 'Glyma.19G008300' => 'gma', 'Glyma.19G008500' => 'gma', 'Glyma.19G008600' => 'gma', 'Glyma.19G008700' => 'gma', 'Glyma.20G036850' => 'gma', 'Gohir.A01G060100' => 'ghi', 'Gohir.A03G139500' => 'ghi', 'Gohir.A05G359400' => 'ghi', 'Gohir.A07G091700' => 'ghi', 'Gohir.A07G092000' => 'ghi', 'Gohir.A07G092100' => 'ghi', 'Gohir.A07G092200' => 'ghi', 'Gohir.A07G092275' => 'ghi', 'Gohir.A07G198100' => 'ghi', 'Gohir.A07G198200' => 'ghi', 'Gohir.A07G198300' => 'ghi', 'Gohir.A07G198400' => 'ghi', 'Gohir.A07G220000' => 'ghi', 'Gohir.A07G220450' => 'ghi', 'Gohir.A09G026300' => 'ghi', 'Gohir.D01G046600' => 'ghi', 'Gohir.D02G162400' => 'ghi', 'Gohir.D04G054800' => 'ghi', 'Gohir.D07G096400' => 'ghi', 'Gohir.D07G096500' => 'ghi', 'Gohir.D07G096600' => 'ghi', 'Gohir.D07G096700' => 'ghi', 'Gohir.D07G096750' => 'ghi', 'Gohir.D07G204500' => 'ghi', 'Gohir.D07G204600' => 'ghi', 'Gohir.D07G204700' => 'ghi', 'Gohir.D07G204800' => 'ghi', 'Gohir.D07G226700' => 'ghi', 'Gohir.D07G227000' => 'ghi', 'Gohir.D09G025700' => 'ghi', 'Gohir.D09G038060' => 'ghi', 'Gohir.D11G234350' => 'ghi', 'Gohir.D11G308760' => 'ghi', 'Gorai.001G103700' => 'gra', 'Gorai.001G103800' => 'gra', 'Gorai.001G103900' => 'gra', 'Gorai.001G104000' => 'gra', 'Gorai.001G104100' => 'gra', 'Gorai.001G230300' => 'gra', 'Gorai.001G230400' => 'gra', 'Gorai.001G230500' => 'gra', 'Gorai.001G230800' => 'gra', 'Gorai.001G261600' => 'gra', 'Gorai.001G261900' => 'gra', 'Gorai.002G066100' => 'gra', 'Gorai.004G092900' => 'gra', 'Gorai.005G182400' => 'gra', 'Gorai.006G030000' => 'gra', 'Gorai.006G043400' => 'gra', 'Gorai.007G340500' => 'gra', 'Gorai.012G061400' => 'gra', 'Gorai.N025900' => 'gra', 'Gorai.N026000' => 'gra', 'GSVIVG01005919001' => 'vvi', 'GSVIVG01013734001' => 'vvi', 'GSVIVG01014259001' => 'vvi', 'GSVIVG01027538001' => 'vvi', 'HanXRQChr01g0016281' => 'han', 'HanXRQChr01g0016291' => 'han', 'HanXRQChr01g0016351' => 'han', 'HanXRQChr01g0016361' => 'han', 'HanXRQChr01g0016371' => 'han', 'HanXRQChr04g0108311' => 'han', 'HanXRQChr04g0108331' => 'han', 'HanXRQChr04g0108341' => 'han', 'HanXRQChr08g0208751' => 'han', 'HanXRQChr08g0208761' => 'han', 'HanXRQChr08g0208771' => 'han', 'HanXRQChr10g0302461' => 'han', 'HanXRQChr15g0479701' => 'han', 'Haze_03357' => 'cav', 'Haze_03358' => 'cav', 'Haze_03359' => 'cav', 'Haze_03360' => 'cav', 'Haze_03364' => 'cav', 'Haze_09378' => 'cav', 'Haze_12181' => 'cav', 'Haze_14670' => 'cav', 'Haze_14671' => 'cav', 'Haze_16840' => 'cav', 'Hma1.2p1_0033F.1_g020880' => 'hma', 'Hma1.2p1_0226F.1_g095210' => 'hma', 'Hma1.2p1_0226F.1_g095220' => 'hma', 'Hma1.2p1_0536F.1_g174030' => 'hma', 'HPP92_003173' => 'vpl', 'HPP92_006221' => 'vpl', 'HPP92_009942' => 'vpl', 'HPP92_021507' => 'vpl', 'HPP92_021512' => 'vpl', 'HPP92_024281' => 'vpl', 'HPP92_024317' => 'vpl', 'Hund18455' => 'sun', 'Hund18456' => 'sun', 'Hund22810' => 'sun', 'Hund25352' => 'sun', 'Lalb_Chr10g0092961' => 'lal', 'Lalb_Chr10g0092971' => 'lal', 'Lalb_Chr16g0392401' => 'lal', 'Lalb_Chr19g0125921' => 'lal', 'Lalb_Chr19g0140461' => 'lal', 'Lalb_Chr25g0286171' => 'lal', 'Lj1A836G33' => 'lonja', 'Lj1A90T44' => 'lonja', 'Lj1C91T9' => 'lonja', 'Lj1C93T11' => 'lonja', 'Lj1g0004706' => 'lja', 'Lj1g0018046' => 'lja', 'Lj2C1121T11' => 'lonja', 'Lj2g0013203' => 'lja', 'Lj2g0020938' => 'lja', 'Lj2g0022721' => 'lja', 'Lj3g0008187' => 'lja', 'Lj3g0009684' => 'lja', 'Lj3g0011470' => 'lja', 'Lj3g0016232' => 'lja', 'Lj4g0025261' => 'lja', 'Lj6A806G48' => 'lonja', 'Lj9A572T86' => 'lonja', 'Lsat_1_v5_gn_3_48340' => 'lsa', 'Lsat_1_v5_gn_5_128780' => 'lsa', 'Lsat_1_v5_gn_5_177840' => 'lsa', 'Lsat_1_v5_gn_5_177860' => 'lsa', 'Lsat_1_v5_gn_8_156221' => 'lsa', 'Lsat_1_v5_gn_8_156761' => 'lsa', 'Lsat_1_v5_gn_8_89141' => 'lsa', 'Manes.12G049700' => 'mes', 'Manes.12G049701' => 'mes', 'Manes.12G049702' => 'mes', 'Manes.12G050000' => 'mes', 'Manes.12G158400' => 'mes', 'Manes.13G030100' => 'mes', 'Manes.13G051360' => 'mes', 'Manes.13G051420' => 'mes', 'Manes.13G051480' => 'mes', 'Manes.13G051540' => 'mes', 'Manes.17G121000' => 'mes', 'Mapoly0001s0375' => 'mpo', 'Mapoly0034s0003' => 'mpo', 'Mapoly0049s0129' => 'mpo', 'MBI04_g43161_MAGBIO' => 'mbi', 'MBI06_g45594_MAGBIO' => 'mbi', 'MBI07_g24023_MAGBIO' => 'mbi', 'MBI07_g29205_MAGBIO' => 'mbi', 'MBI07_g31946_MAGBIO' => 'mbi', 'MBI10_g10246_MAGBIO' => 'mbi', 'MCO09G457' => 'mco', 'MD00G1186900' => 'mdo', 'MD00G1187100' => 'mdo', 'MD03G1236200' => 'mdo', 'MD05G1166800' => 'mdo', 'MD05G1167000' => 'mdo', 'MD05G1167100' => 'mdo', 'MD05G1167200' => 'mdo', 'MD05G1167300' => 'mdo', 'MD05G1167400' => 'mdo', 'MD05G1167600' => 'mdo', 'MD05G1168000' => 'mdo', 'MD05G1168100' => 'mdo', 'MD05G1168200' => 'mdo', 'MD05G1168400' => 'mdo', 'MD05G1168500' => 'mdo', 'MD05G1168600' => 'mdo', 'MD05G1168700' => 'mdo', 'MD05G1168800' => 'mdo', 'MD09G1033200' => 'mdo', 'MD09G1033400' => 'mdo', 'MD09G1033500' => 'mdo', 'MD09G1033600' => 'mdo', 'MD09G1033700' => 'mdo', 'MD09G1034000' => 'mdo', 'MD10G1156900' => 'mdo', 'MD10G1157000' => 'mdo', 'MD10G1157100' => 'mdo', 'MD10G1157200' => 'mdo', 'MD11G1257100' => 'mdo', 'MD13G1092200' => 'mdo', 'MD16G1092800' => 'mdo', 'Medtr1319s0010' => 'mtr', 'Medtr2g078520' => 'mtr', 'Medtr4g032995' => 'mtr', 'Medtr4g033205' => 'mtr', 'Medtr4g036150' => 'mtr', 'Medtr4g036170' => 'mtr', 'Medtr4g036260' => 'mtr', 'Medtr4g036310' => 'mtr', 'Medtr6g012100' => 'mtr', 'Medtr6g012140' => 'mtr', 'Medtr6g012160' => 'mtr', 'Medtr6g012170' => 'mtr', 'Medtr6g039950' => 'mtr', 'Medtr7g034395' => 'mtr', 'Medtr7g055743' => 'mtr', 'Medtr8g035630' => 'mtr', 'Medtr8g035880' => 'mtr', 'Medtr8g064610' => 'mtr', 'MELO3C011998.2' => 'cme', 'MELO3C019391.2' => 'cme', 'MELO3C021073.2' => 'cme', 'MELO3C021074.2' => 'cme', 'MELO3C021536.2' => 'cme', 'Migut.B01656' => 'egut', 'Migut.D02517' => 'egut', 'Migut.E00163' => 'egut', 'Migut.L01418' => 'egut', 'Migut.M00767' => 'egut', 'Migut.N00642' => 'egut', 'MSTRG.17212' => 'ama', 'MSTRG.17985' => 'ama', 'MSTRG.20979' => 'ama', 'MSTRG.2396' => 'ama', 'MSTRG.2397' => 'ama', 'MSTRG.7901' => 'ama', 'Nitab4.5_0000203g0130' => 'nta', 'Nitab4.5_0000332g0200' => 'nta', 'Nitab4.5_0000403g0100' => 'nta', 'Nitab4.5_0000403g0140' => 'nta', 'Nitab4.5_0002436g0010' => 'nta', 'Nitab4.5_0003033g0020' => 'nta', 'Nitab4.5_0007704g0010' => 'nta', 'Nitab4.5_0007704g0020' => 'nta', 'Nitab4.5_0008545g0010' => 'nta', 'Nitab4.5_0008803g0020' => 'nta', 'Nn1g04277' => 'nnu', 'Nn1g08174' => 'nnu', 'Nn1g08175' => 'nnu', 'Nn1g08181' => 'nnu', 'Nn3g16877' => 'nnu', 'Nn6g34356' => 'nnu', 'Oeu001740.1' => 'oeu', 'Oeu019294.1' => 'oeu', 'Oeu023107.1' => 'oeu', 'Oeu023108.2' => 'oeu', 'Oeu025350.3' => 'oeu', 'Oeu037898.1' => 'oeu', 'Oeu042104.2' => 'oeu', 'Oeu054054.1' => 'oeu', 'Oeu056398.1' => 'oeu', 'Oeu056399.1' => 'oeu', 'Oeu056400.1' => 'oeu', 'Oeu056403.1' => 'oeu', 'Oeu064644.3' => 'oeu', 'Os01g0753100' => 'osa', 'Os04g0358000' => 'osa', 'Os04g0359100' => 'osa', 'Os04g0359700' => 'osa', 'Os04g0372700' => 'osa', 'Os08g0379400' => 'osa', 'Os09g0502500' => 'osa', 'Os09g0503000' => 'osa', 'Os09g0503100' => 'osa', 'Peaxi162Scf00000g00284' => 'pax', 'Peaxi162Scf00338g00419' => 'pax', 'Peaxi162Scf00416g00417' => 'pax', 'Peaxi162Scf00487g00042' => 'pax', 'Peaxi162Scf00487g00058' => 'pax', 'Peaxi162Scf00487g00314' => 'pax', 'PGR042G2106' => 'pgr', 'PGR044G0300' => 'pgr', 'PGR044G1148' => 'pgr', 'PGR083G0548' => 'pgr', 'PGR083G2879' => 'pgr', 'PGR119G0609' => 'pgr', 'PGR142G0143' => 'pgr', 'PGR142G2959' => 'pgr', 'PGSC0003DMG400008724' => 'stu', 'PGSC0003DMG400015372' => 'stu', 'PGSC0003DMG400017096' => 'stu', 'PGSC0003DMG400017097' => 'stu', 'PGSC0003DMG400024346' => 'stu', 'PGSC0003DMG400030998' => 'stu', 'PGSC0003DMG400040303' => 'stu', 'Phvul.003G060300' => 'pvu', 'Phvul.004G014100' => 'pvu', 'Phvul.004G014200' => 'pvu', 'Phvul.005G069200' => 'pvu', 'Phvul.008G132800' => 'pvu', 'Phvul.008G132900' => 'pvu', 'Phvul.008G151800' => 'pvu', 'Phvul.011G002400' => 'pvu', 'Phvul.011G002500' => 'pvu', 'Potri.001G342800' => 'ptr', 'Potri.001G342900' => 'ptr', 'Potri.001G343000' => 'ptr', 'Potri.001G373200' => 'ptr', 'Potri.001G391100' => 'ptr', 'Potri.001G452600' => 'ptr', 'Potri.008G161600' => 'ptr', 'Potri.016G136100' => 'ptr', 'Pp3c13_1410' => 'ppa', 'Pp3c14_1550' => 'ppa', 'Pp3c15_2540' => 'ppa', 'Pp3c17_7890' => 'ppa', 'Pp3c1_4270' => 'ppa', 'Pp3c26_10280' => 'ppa', 'Pp3c2_35890' => 'ppa', 'Pp3c2_37350' => 'ppa', 'Pp3c2_37490' => 'ppa', 'Pp3c3_18200' => 'ppa', 'Pp3c3_23410' => 'ppa', 'Pp3c3_27500' => 'ppa', 'Pp3c4_14634' => 'ppa', 'Pp3c5_16700' => 'ppa', 'Pp3c7_23980' => 'ppa', 'Pp3c9_1500' => 'ppa', 'PRCOL_00001047' => 'pco', 'PRCOL_00004207' => 'pco', 'PRCOL_00006601' => 'pco', 'Prupe.1G253500' => 'ppe', 'Prupe.3G284300' => 'ppe', 'Prupe.3G284400' => 'ppe', 'Prupe.3G284500' => 'ppe', 'Prupe.3G284600' => 'ppe', 'Prupe.3G284700' => 'ppe', 'Prupe.3G284800' => 'ppe', 'Prupe.3G284900' => 'ppe', 'Prupe.4G173000' => 'ppe', 'Prupe.8G195100' => 'ppe', 'Prupe.8G195300' => 'ppe', 'Prupe.8G195500' => 'ppe', 'Prupe.8G195600' => 'ppe', 'Prupe.8G195700' => 'ppe', 'Prupe.8G195800' => 'ppe', 'Prupe.8G195900' => 'ppe', 'Prupe.8G196000' => 'ppe', 'Psat0s4321g0040' => 'psa', 'Psat3g150000' => 'psa', 'Psat3g150080' => 'psa', 'Psat3g150120' => 'psa', 'Psat3g164320' => 'psa', 'Psat3g172160' => 'psa', 'Psat4g123800' => 'psa', 'Psat4g149880' => 'psa', 'Psat4g149920' => 'psa', 'Psat5g241360' => 'psa', 'Psat7g147200' => 'psa', 'Psat7g147240' => 'psa', 'PSO017G0204' => 'pso', 'PSO017G0489' => 'pso', 'PSO017G2427' => 'pso', 'PSO017G5724' => 'pso', 'PSO063G1820' => 'pso', 'PSO063G7098' => 'pso', 'PSO081G0083' => 'pso', 'PSO210G4318' => 'pso', 'PSO229G0145' => 'pso', 'PSO478G1399' => 'pso', 'PSO675G6967' => 'pso', 'PSO832G3682' => 'pso', 'QL02p070750' => 'qlo', 'QL02p070753' => 'qlo', 'QL02p076556' => 'qlo', 'QL02p076612' => 'qlo', 'QL03p060248' => 'qlo', 'QL08p023388' => 'qlo', 'QL08p051821' => 'qlo', 'QL09p049534' => 'qlo', 'QL09p049556' => 'qlo', 'QL09p049578' => 'qlo', 'QL09p049612' => 'qlo', 'QL09p049648' => 'qlo', 'QL09p049697' => 'qlo', 'QL09p049778' => 'qlo', 'QL09p049831' => 'qlo', 'QL09p049846' => 'qlo', 'RcHm_v2.0_Chr2g0171461' => 'rch', 'RcHm_v2.0_Chr2g0171481' => 'rch', 'RcHm_v2.0_Chr2g0171491' => 'rch', 'RcHm_v2.0_Chr2g0171531' => 'rch', 'RcHm_v2.0_Chr2g0172531' => 'rch', 'RcHm_v2.0_Chr4g0443881' => 'rch', 'RcHm_v2.0_Chr5g0031931' => 'rch', 'RcHm_v2.0_Chr5g0031981' => 'rch', 'RcHm_v2.0_Chr5g0031991' => 'rch', 'RcHm_v2.0_Chr5g0032001' => 'rch', 'RcHm_v2.0_Chr5g0032041' => 'rch', 'RcHm_v2.0_Chr6g0283611' => 'rch', 'RcHm_v2.0_Chr6g0283631' => 'rch', 'RcHm_v2.0_Chr6g0283641' => 'rch', 'RcHm_v2.0_Chr6g0283661' => 'rch', 'RcHm_v2.0_Chr6g0283681' => 'rch', 'RcHm_v2.0_Chr6g0283691' => 'rch', 'RcHm_v2.0_Chr6g0283701' => 'rch', 'RcHm_v2.0_Chr6g0283711' => 'rch', 'RcHm_v2.0_Chr6g0283721' => 'rch', 'Rhsim01G0250600' => 'rsi', 'Rhsim01G0250700' => 'rsi', 'Rhsim01G0250800' => 'rsi', 'Rhsim01G0250900' => 'rsi', 'Rhsim06G0203600' => 'rsi', 'Rhsim07G0024500' => 'rsi', 'Rhsim08G0054900' => 'rsi', 'Rhsim09G0002800' => 'rsi', 'Rhsim09G0003100' => 'rsi', 'Rhsim12G0046400' => 'rsi', 'Rhsim13G0050200' => 'rsi', 'Rhsim13G0050300' => 'rsi', 'Sabra04G0153000' => 'sbr', 'Sabra08G0123400' => 'sbr', 'Sabra08G0123500' => 'sbr', 'Sabra16G0222400' => 'sbr', 'Sabra16G0245600' => 'sbr', 'Sabra16G0256200' => 'sbr', 'Sabra16G0256300' => 'sbr', 'Sabra16G0256400' => 'sbr', 'Sabra16G0256500' => 'sbr', 'Sabra16G0305700' => 'sbr', 'SalBow3G2582' => 'sbo', 'SalBow3G3917' => 'sbo', 'SalBow3G4559' => 'sbo', 'SalBow3G4625' => 'sbo', 'SalBow6G4617' => 'sbo', 'SalBow6G6436' => 'sbo', 'SalBow7G1016' => 'sbo', 'SalBow8G3643' => 'sbo', 'SalBow8G5411' => 'sbo', 'Sc11g0001160' => 'sci', 'Sc15g0002610' => 'sci', 'Sc16g0007340' => 'sci', 'Sc24g0003430' => 'sci', 'Sc24g0003440' => 'sci', 'Sc24g0003450' => 'sci', 'Sed0000324' => 'sed', 'Sed0001275' => 'sed', 'Sed0007906' => 'sed', 'Sed0011462' => 'sed', 'Sed0014270' => 'sed', 'Sed0019647' => 'sed', 'Sed0025855' => 'sed', 'SEGI_00701' => 'sgi', 'SEGI_01885' => 'sgi', 'SEGI_02996' => 'sgi', 'SEGI_03104' => 'sgi', 'SEGI_04188' => 'sgi', 'SEGI_09044' => 'sgi', 'SEGI_09113' => 'sgi', 'SEGI_13834' => 'sgi', 'SEGI_13861' => 'sgi', 'SEGI_19341' => 'sgi', 'SEGI_19514' => 'sgi', 'SEGI_19921' => 'sgi', 'SEGI_24233' => 'sgi', 'SEGI_25856' => 'sgi', 'SEGI_26852' => 'sgi', 'SEGI_28072' => 'sgi', 'SEGI_28927' => 'sgi', 'SEGI_29514' => 'sgi', 'SEGI_31196' => 'sgi', 'SEGI_31903' => 'sgi', 'SEGI_33368' => 'sgi', 'SEGI_35099' => 'sgi', 'SEGI_36046' => 'sgi', 'SGA_v2.0_scaffold36G14521' => 'sas', 'SGA_v2.0_scaffold5G02544' => 'sas', 'SGA_v2.0_scaffold662G53401' => 'sas', 'SGA_v2.0_scaffold71G23852' => 'sas', 'SGA_v2.0_scaffold73G24221' => 'sas', 'SMO115G0334' => 'smo', 'SMO116G0423' => 'smo', 'SMO116G0426' => 'smo', 'SMO145G0252' => 'smo', 'SMO364G0362' => 'smo', 'SMO364G0793' => 'smo', 'Solyc05g005480.2' => 'sly', 'Solyc09g059020.4' => 'sly', 'Solyc09g059030.4' => 'sly', 'Solyc09g059040.3' => 'sly', 'Solyc09g059060.1' => 'sly', 'Solyc09g059070.3' => 'sly', 'Solyc12g014050.2' => 'sly', 'Sopen05g001500' => 'spe', 'Sopen09g020960' => 'spe', 'Sopen09g022000' => 'spe', 'Sopen09g022010' => 'spe', 'Sopen09g022020' => 'spe', 'Sopen12g005790' => 'spe', 'Sp1g21140' => 'spa', 'Sp3g13290' => 'spa', 'Sp7g10090' => 'spa', 'TAR362G0422' => 'tar', 'TAR374G0102' => 'tar', 'TAR375G1138' => 'tar', 'TAR622G0650' => 'tar', 'TAR622G0928' => 'tar', 'TAR625G0992' => 'tar', 'TAR627G0901' => 'tar', 'TAR627G1115' => 'tar', 'TAR636G0397' => 'tar', 'TAR636G0865' => 'tar', 'TAR636G2960' => 'tar', 'THA.LOC104798757' => 'tha', 'THA.LOC104807125' => 'tha', 'THA.LOC104808802' => 'tha', 'THA.LOC104808803' => 'tha', 'THA.LOC104808981' => 'tha', 'THA.LOC104810454' => 'tha', 'THA.LOC104821659' => 'tha', 'Thecc.01G216100' => 'tca', 'Thecc.01G216200' => 'tca', 'Thecc.02G250200' => 'tca', 'Thecc.04G009100' => 'tca', 'Thecc.04G009200' => 'tca', 'Thecc.04G009300' => 'tca', 'Thecc.07G100100' => 'tca', 'Thhalv10007901m.g' => 'esa', 'Thhalv10020985m.g' => 'esa', 'Thhalv10025457m.g' => 'esa', 'TPR.G11658' => 'tpr', 'TPR.G16187' => 'tpr', 'TPR.G21925' => 'tpr', 'TPR.G22064' => 'tpr', 'TPR.G22346' => 'tpr', 'TPR.G2263' => 'tpr', 'TPR.G2298' => 'tpr', 'TPR.G27897' => 'tpr', 'TPR.G27899' => 'tpr', 'TPR.G27900' => 'tpr', 'TPR.G27909' => 'tpr', 'TPR.G29160' => 'tpr', 'TPR.G29650' => 'tpr', 'TPR.G30524' => 'tpr', 'TPR.G30818' => 'tpr', 'TPR.G3149' => 'tpr', 'TPR.G38071' => 'tpr', 'TPR.G40527' => 'tpr', 'TWI36G0971' => 'twi', 'TWI36G1411' => 'twi', 'TWI36G1480' => 'twi', 'TWI36G1663' => 'twi', 'TWI38G1662' => 'twi', 'TWI59G1254' => 'twi', 'TWI73G0406' => 'twi', 'unitig_0.g2264' => 'ugi', 'unitig_0.g408' => 'ugi', 'unitig_21.g20409' => 'ugi', 'unitig_22.g5375' => 'ugi', 'unitig_26.g10359' => 'ugi', 'unitig_37.g13018' => 'ugi', 'unitig_52.g17400' => 'ugi', 'unitig_736.g22393' => 'ugi', 'vmacro01178' => 'vma', 'vmacro02796' => 'vma', 'vmacro02797' => 'vma', 'vmacro02798' => 'vma', 'vmacro02799' => 'vma', 'vmacro11900' => 'vma', 'vmacro13378' => 'vma', 'vmacro14718' => 'vma', 'vmacro14719' => 'vma', 'vmacro14720' => 'vma', 'vmacro14721' => 'vma', 'vmacro18244' => 'vma', 'vmacro18245' => 'vma', 'vmacro18246' => 'vma', 'VMungo0043G0001' => 'vmu', 'VMungo0251G2961' => 'vmu', 'VMungo0464G0147' => 'vmu', 'VMungo0464G0175' => 'vmu', 'VMungo0464G1459' => 'vmu', 'VMungo0720G0898' => 'vmu', 'VMungo0720G1217' => 'vmu', 'VMungo1080G1405' => 'vmu', 'VMungo1127G0462' => 'vmu', 'VMungo1127G1490' => 'vmu', 'VMungo1383G0017' => 'vmu', 'VMungo1383G0815' => 'vmu', 'VMungo1383G2843' => 'vmu', 'VMungo1413G0001' => 'vmu', 'Zm00001eb042530' => 'zma', 'Zm00001eb102290' => 'zma', 'Zm00001eb142480' => 'zma', 'Zm00001eb152950' => 'zma', 'Zm00001eb317510' => 'zma', 'Zm00001eb420610' => 'zma' ) $gf_id = 'HOM05D000599' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000599' ) $data_identifier = 'HOM05D000599' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 7, 'aag' => (int) 9, 'ach' => (int) 7, 'amhyb' => (int) 6, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 21, 'ath' => (int) 3, 'atr' => (int) 7, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 6, 'bol' => (int) 4, 'bra' => (int) 4, 'can' => (int) 9, 'cansat' => (int) 11, 'chi' => (int) 6, 'cru' => (int) 3, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 10, 'cde' => (int) 5, 'cfa' => (int) 18, 'ccl' => (int) 8, 'cil' => (int) 12, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 19, 'din' => (int) 5, 'dzi' => (int) 15, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 18, 'fan' => (int) 29, 'fve' => (int) 13, 'gma' => (int) 14, 'ghi' => (int) 33, 'gra' => (int) 20, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 10, 'lsa' => (int) 7, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 31, 'mtr' => (int) 18, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 13, 'osa' => (int) 9, 'pax' => (int) 6, 'pgr' => (int) 8, 'stu' => (int) 7, 'pvu' => (int) 9, 'ptr' => (int) 8, 'ppa' => (int) 16, 'pco' => (int) 3, 'ppe' => (int) 17, 'psa' => (int) 12, 'pso' => (int) 12, 'qlo' => (int) 16, 'rch' => (int) 20, 'rsi' => (int) 12, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 23, 'sas' => (int) 5, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 7, 'esa' => (int) 3, 'tpr' => (int) 18, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 14, 'vmu' => (int) 14, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb420610' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1